Services provided by the BioData.pt community. Our network spans word-class research and teaching organisations in the Health and Life Sciences. Explore the services they provide to the community here.
AlcoR
Alignment-free simulation, mapping, and visualization of low-complexity regions in FASTA data.
University of Aveiro
AltaiR
A C toolkit for alignment-free and spatial-temporal analysis of multi-FASTA data
University of Aveiro
CoV2ID
CoV2ID provides a complete, quality checked and regularly updated list of oligonucleotides for SARS-CoV-2. The database evaluates available therapeutic and detection protocols according to the virus genetic diversity.
CIIMAR
EAGLE
EAGLE is an alignment-free method and associated program to compute relative absent words (RAW) in genomic sequences using a reference sequence.
University of Aveiro
EbolaID
EbolaID provides a complete, quality checked and regularly updated list of oligonucleotides for the Ebola virus.
CIIMAR
GTO
GTO is a toolkit to unify pipelines in genomic and proteomic research.
University of Aveiro
Inforbiomares
CCMAR - Centre of Marine Sciences of the Algarve
MitoBreak: The mitochondrial DNA breakpoints database
University of Porto
NCBI Mass Sequence Downloader
This program will download sequences en masse from several NCBI databases (at the user's choice).
Faculty of Sciences of the University of Lisbon
PhagePromoter
PhagePromoter is a python tool that predicts promoter sequences in phage genomes, using machine learning models.
University of Minho
PHENO
PHENO is an implementation of the BrAPI and aims to provide access to plant phenotypic datasets, with a major focus on the woody plant domain.
BioData.pt
SeagrassTraitDB
SeagrassTraitDB is a global data base of curated seagrass traits. It integrates world-wide seagrass trait data in one consistent format.
CCMAR - Centre of Marine Sciences of the Algarve
Structure_threader
A wrapper program to parallelise and automate runs of "Structure", "fastStructure" and "MavericK".
Faculty of Sciences of the University of Lisbon