We are currently reviewing this section. Some tools in this page may be outdated and no longer maintained. Please bear with us while we review this page.
Alignment-free simulation, mapping, and visualization of low-complexity regions in FASTA data.
PythonVideoAnnotator is a graphical application written in python, to analyse videos and create notes for events in the video.
CoV2ID provides a complete, quality checked and regularly updated list of oligonucleotides for SARS-CoV-2. The database evaluates available therapeutic and detection protocols according to the virus genetic diversity.
WebSpecmine is a web-based application designed to perform the analysis of metabolomics data based on spectroscopic and chromatographic techniques (NMR, Infrared, UV-visible, and Raman, and LC/GC-MS)) and compound concentrations.
A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
SEDA (SEquence DAtaset builder) is an open source application for processing FASTA files containing DNA and protein sequences.
PhagePromoter is a python tool that predicts promoter sequences in phage genomes, using machine learning models.
EAGLE is an alignment-free method and associated program to compute relative absent words (RAW) in genomic sequences using a reference sequence.
BDBM (BLAST DataBase Manager) provides a graphical user interface that allows you to create high quality sequence datasets using the tools included.
Bioinformatics tool that automatizes the detection of positively selected sites given a set of unaligned nucleotide sequence data
A pipeline with emphasis on SNP detection. It will detect SNPs in NGS data where no reference sequence nor strain information is available.
This program will download sequences en masse from several NCBI databases (at the user's choice).
A comprehensive on-line resource with curated datasets of mitochondrial DNA (mtDNA) rearrangements. MitoBreak provides a complete, quality checked and regularly updated list of breakpoints from: circular deleted mtDNAs (deletions) circular partially-duplicated mtDNAs (duplications) linear mtDNAs
PHYLOViZ is a platform independent JAVA software that allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data.
Web application that provides a graphical interface that allows users to easily perform, store and produce reports on their analysis.
Dockerfiles for the images maintained by the Phenotypic Evolution Group at the i3S.
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