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AltaiR |
A C toolkit for alignment-free and spatial-temporal analysis of multi-FASTA data
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University of Aveiro |
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AlcoR |
Alignment-free simulation, mapping, and visualization of low-complexity regions in FASTA data.
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University of Aveiro |
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CoV2ID |
CoV2ID provides a complete, quality checked and regularly updated list of oligonucleotides for SARS-CoV-2. The database evaluates available therapeutic and detection protocols according to the virus genetic diversity.
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CIIMAR |
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WebSpecmine |
WebSpecmine is a web-based application designed to perform the analysis of metabolomics data based on spectroscopic and chromatographic techniques (NMR, Infrared, UV-visible, and Raman, and LC/GC-MS)) and compound concentrations.
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University of Minho |
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TriFusion |
Streamlining phylogenomic data gathering, processing and visualisation
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Structure_threader |
A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
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SEDA |
SEDA (SEquence DAtaset builder) is an open source application for processing FASTA files containing DNA and protein sequences.
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i3S - Institute for Research and Innovation in Health |
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PhagePromoter |
PhagePromoter is a python tool that predicts promoter sequences in phage genomes, using machine learning models.
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University of Minho |
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Smash++ |
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University of Aveiro |
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GTO |
GTO is a toolkit to unify pipelines in genomic and proteomic research.
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University of Aveiro |
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EAGLE |
EAGLE is an alignment-free method and associated program to compute relative absent words (RAW) in genomic sequences using a reference sequence.
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University of Aveiro |
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BLAST DataBase Manager |
BDBM (BLAST DataBase Manager) provides a graphical user interface that allows you to create high quality sequence datasets using the tools included.
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i3S - Institute for Research and Innovation in Health |
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ADOPS |
Bioinformatics tool that automatizes the detection of positively selected sites given a set of unaligned nucleotide sequence data
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i3S - Institute for Research and Innovation in Health |
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4Pipe4 |
A pipeline with emphasis on SNP detection. It will detect SNPs in NGS data where no reference sequence nor strain information is available.
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Faculty of Sciences of the University of Lisbon |
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NCBI Mass Sequence Downloader |
This program will download sequences en masse from several NCBI databases (at the user's choice).
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Faculty of Sciences of the University of Lisbon |
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MitoBreak: The mitochondrial DNA breakpoints database |
A comprehensive on-line resource with curated datasets of mitochondrial DNA (mtDNA) rearrangements. MitoBreak provides a complete, quality checked and regularly updated list of breakpoints from: circular deleted mtDNAs (deletions) circular partially-duplicated mtDNAs (duplications) linear mtDNAs
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University of Porto |
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COEUS |
Streamlined back-end framework for rapid semantic web application development.
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University of Aveiro |
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PHYLOViZ |
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iMM - Instituto de Medicina Molecular João Lobo Antunes |
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D-cellerate |
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BioData.pt |
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Bioinformatics Docker Images Project |
Dockerfiles for the images maintained by the Phenotypic Evolution Group at the i3S.
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i3S - Institute for Research and Innovation in Health |
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BioData.pt Data Stewardship Wizard |
Create, plan, collaborate, and bring your data management plans to life with a tool trusted by thousands of people worldwide — from data management pioneers, to international research institutes.
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BioData.pt |
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Biome-Shiny |
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BioData.pt |