IGC

D-cellerate

  • Posted on: 18 May 2020
  • By: Daniel Faria

D-cellerate is a web application that provides a graphical interface for Seurat version 2, a popular single-cell RNA-seq (scRNA-seq) package for R. It provides an easy-to-use UI and the ability to export results as an HTML file.

Biome-Shiny

  • Posted on: 5 December 2019
  • By: Daniel Faria

A Shiny R app for microbiome visualization, built around the "microbiome" package.

 

If you use this resource, please acknowledge: BioData.pt – Infraestrutura Portuguesa de Dados Biológicos refª 22231/01/SAICT/2016, funded by Portugal 2020.

Biome-Shiny: Automatic, interactive plots to visualize environmental diversity | 28/Nov @ IGC Open Day Universities

Metagenomics is a branch that processes large quantities of biological data, extracted directly from an environment. In order to derive useful information from this great volume of data, it is necessary to make use of informatics support, which, in turn, implies to a need to know how to use various tools and programming languages, and the need to develop tools to simplify the data analysis.

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