operation

Structure_threader

A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
Furthermore, Structure_threader further extends on the parallelization by also automating the estimation of "K", and the MeanQ plotting. These are outputted in 2 formats, a typical vectorial format, of "publication quality" plots, and a new, interactive plot, which is particularly suited for data exploration.

4Pipe4

A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information

Next-generation sequencing datasets are becoming more frequent, and their use in population studies is becoming widespread. For non-model species, without a reference genome, it is possible from a panel of individuals to identify a set of SNPs that can be used for further population genotyping. However the lack of a reference genome to which the sequenced data could be compared makes the finding of SNPs more troublesome.